10 #ifndef vtkHDFWriterImplementation_h
11 #define vtkHDFWriterImplementation_h
23 VTK_ABI_NAMESPACE_BEGIN
108 const char*
name,
int rank, std::vector<hsize_t> dimensions,
const void*
data);
161 hid_t group,
const char* filename,
const char*
source,
const char* targetLink);
236 hid_t group,
const char* name,
const std::vector<vtkIdType>& values);
245 hsize_t chunkSize[],
int compressionLevel = 0);
253 const std::vector<hsize_t>& dims, hsize_t chunkSize[],
int compressionLevel = 0);
262 hid_t dataset,
const std::vector<vtkIdType>&
value,
bool offset,
bool trim =
false);
279 const std::vector<hsize_t>& dims = {});
288 const std::vector<hsize_t>& dims = {});
298 const std::vector<vtkIdType>&
value,
bool offset =
false,
bool trim =
false);
327 vtkHDF::ScopedH5FHandle File;
328 vtkHDF::ScopedH5GHandle Root;
329 vtkHDF::ScopedH5GHandle StepsGroup;
330 std::vector<vtkHDF::ScopedH5FHandle> Subfiles;
331 std::vector<std::string> SubfileNames;
332 bool SubFilesReady =
false;
334 const std::array<std::string, 4> PrimitiveNames = { {
"Vertices",
"Lines",
"Polygons",
341 hsize_t GetNumberOfCellsSubfile(
const std::string& basePath, std::size_t subfileId, hsize_t part,
349 char GetPrimitive(
hid_t group);
359 std::size_t subfileId, hsize_t part,
char primitive = 0xff);
373 bool GetSubFilesDatasetSize(
377 enum class IndexingMode
397 IndexingMode GetDatasetIndexationMode(
const std::string& path);
400 VTK_ABI_NAMESPACE_END
bool CreateFile(bool overwrite, const std::string &filename)
Create the file from the filename and create the root VTKHDF group.
bool AddOrCreateFieldDataSizeValueDataset(hid_t group, const char *name, vtkIdType *value, vtkIdType size, bool offset=false)
Append a 2D integer value to the dataset with name FieldDataSize.
hid_t GetStepsGroup(hid_t currentGroup)
vtkHDF::ScopedH5AHandle CreateVectorAttribute(hid_t group, const char *name, hid_t type, hsize_t size, const void *data)
Create a vector attribute (1D array) with arbitrary type and size in the given group.
vtkHDF::ScopedH5AHandle CreateStringAttribute(hid_t group, const char *name, const std::string &value)
Create a string attribute in the given group.
void CreateArraysFromNonNullPart(hid_t group, vtkDataObject *data)
Initialize empty data object array structures from a base group.
vtkHDF::ScopedH5DHandle CreateSingleRowDataset(hid_t group, const char *name, const std::vector< vtkIdType > &values)
Creates a dataset and write a row of values to it.
Abstract superclass for all arrays.
vtkHDF::ScopedH5GHandle CreateHdfGroupWithLinkOrder(hid_t group, const char *name)
Retrieve or create a group that keeps track of link creation order Returned scoped handle may be inva...
bool GetSubFilesReady()
Inform the implementation that all the data has been written in subfiles, and that the virtual datase...
concrete dataset represents vertices, lines, polygons, and triangle strips
Stores a group name and the corresponding cell array.
bool AddOrCreateSingleRowDataset(hid_t group, const char *name, const std::vector< vtkIdType > &value, bool offset=false, bool trim=false)
Append a single row of integer values to the dataset with name name in group group.
vtkHDF::ScopedH5GHandle CreateHdfGroup(hid_t group, const char *name)
Retrieve group if it exists, create it if needed.
bool AddFieldDataSizeValueToDataset(hid_t dataset, vtkIdType *value, vtkIdType size, bool offset)
Add a 2D value of integer type to an existing dataspace which represents the FieldDataSize.
void SetSubFilesReady(bool status)
Inform the implementation that all the data has been written in subfiles, and that the virtual datase...
bool AddSingleRowToDataset(hid_t dataset, const std::vector< vtkIdType > &value, bool offset, bool trim=false)
Add a single row of integer type to an existing dataspace.
void CloseFile()
Close currently handled file, open using CreateFile or OpenFile.
vtkHDF::ScopedH5DHandle CreateHdfDataset(hid_t group, const char *name, hid_t type, hid_t dataspace)
Create a dataset in the given group from a dataspace Returned scoped handle may be invalid...
vtkHDF::ScopedH5SHandle CreateDataspaceFromArray(vtkAbstractArray *dataArray, const std::vector< hsize_t > &dims={})
Creates a dataspace to the exact array dimensions dims provides the dimensions of the structured data...
bool InitDynamicDataset(hid_t group, const char *name, hid_t type, hsize_t cols, hsize_t chunkSize[], int compressionLevel=0)
Create a chunked dataset with an empty extendable dataspace using chunking and set the desired level ...
vtkHDF::ScopedH5GHandle GetSubfileNonNullPart(const std::string &blockPath, int &type)
Find the first non null part for the given path in all subfiles.
vtkHDF::ScopedH5DHandle OpenDataset(hid_t group, const char *name)
Open and return an existing dataset using its group id and dataset name.
vtkHDF::ScopedH5SHandle CreateSimpleDataspace(int rank, const hsize_t dimensions[])
Create a HDF dataspace It is simple (not scalar or null) which means that it is an array of elements ...
boost::graph_traits< vtkGraph * >::vertex_descriptor source(boost::graph_traits< vtkGraph * >::edge_descriptor e, vtkGraph *)
vtkHDF::ScopedH5DHandle CreateDatasetFromDataArray(hid_t group, const char *name, hid_t type, vtkAbstractArray *dataArray, const std::vector< hsize_t > &dims={})
Creates a dataset in the given group from a dataArray and write data to it dims provides the dimensio...
bool CreateExternalLink(hid_t group, const char *filename, const char *source, const char *targetLink)
Create an external link to the real group containing the block dataset.
Implementation(vtkHDFWriter *writer)
vtkHDF::ScopedH5AHandle CreateScalarAttribute(hid_t group, const char *name, int value)
Create a scalar integer attribute in the given group.
bool WriteSumStepsPolyData(hid_t group, const char *name)
For temporal multi-piece meta-files, write the dataset name in group group, which must be the "steps"...
bool CreateVirtualDataset(hid_t group, const char *name, hid_t type, int numComp)
Create a virtual dataset from all the subfiles that have been added.
const char * hdfGroupName
object to represent cell connectivity
bool WriteHeader(hid_t group, const char *hdfType)
Write version and type attributes to the root group A root must be open for the operation to succeed ...
std::string GetGroupName(hid_t group)
Return the name of a group given its id.
bool OpenFile()
Open existing VTKHDF file and set Root and File members.
bool AddArrayToDataset(hid_t dataset, vtkAbstractArray *dataArray, int trim=0, const std::vector< hsize_t > &dims={})
Append a full data array at the end of an existing infinite dataspace.
bool CreateStepsGroup(hid_t group)
Create the steps group in the given group.
bool CreateSoftLink(hid_t group, const char *groupName, const char *targetLink)
Create a soft link to the real group containing the block dataset.
vtkHDF::ScopedH5DHandle CreateAndWriteHdfDataset(hid_t group, hid_t type, hid_t source_type, const char *name, int rank, std::vector< hsize_t > dimensions, const void *data)
Create a dataset in the given group with the given parameters and write data to it Returned scoped ha...
bool AddOrCreateDataset(hid_t group, const char *name, hid_t type, vtkAbstractArray *dataArray, const std::vector< hsize_t > &dims={})
Append the given array to the dataset with the given name, creating it if it does not exist yet...
Write a data object to a VTKHDF file.
vtkHDF::ScopedH5GHandle OpenExistingGroup(hid_t group, const char *name)
Open and return an existing group thanks to id and a relative or absolute path to this group...
virtual ~Implementation()
general representation of visualization data
std::vector< PolyDataTopos > GetCellArraysForTopos(vtkPolyData *polydata)
Get the cell array for the POLY_DATA_TOPOS.
bool OpenSubfile(const std::string &filename)
Open subfile where data has already been written, and needs to be referenced by the main file using v...
bool WriteSumSteps(hid_t group, const char *name)
For temporal multi-piece meta-files, write the dataset name in group group, which must be the "steps"...